biosoc.org
Software for Microfluidic and Biological Automation
This repository provides a comprehensive list of tools designed to facilitate the design and automation of microfluidic devices and other biological tasks. Each tool comes with a description, relevant links to project websites, source code, and demo videos. Feel free to explore the links provided for more information and access to each software tool. For any additional inquiries or support, refer to the respective project websites and repositories.
Contents
3DμF
3DμF is a visual CAD tool for designing microfluidic devices. It offers outputs in STL for CNC milling, SVG for lithography, and also provides a textual JSON representation.
- Project Website: 3DμF Website
- Source Code: GitHub Repository
- Demo Video: YouTube Demo
PyHamilton
PyHamilton provides a set of standardized libraries developed for use with Hamilton liquid handling robots.
Resources
- Source Code: GitHub Repository
Fluigi
Fluigi automates the design of microfluidic devices used in synthetic biology by optimizing their layout based on specifications in the text-based MINT language.
Resources
- Project Website: Fluigi Website
- Source Code: GitHub Repository
- Demo Video: YouTube Demo
Primer3
Primer3 is a tool used for designing and analyzing primers for PCR reactions. It also allows for the selection of primers for sequencing reactions and hybridization probes.
Resources
- Project Website: Primer3 Website
- Source Code: SourceForge Repository
- Demo Video: YouTube Demo